database engineering hurt-lab sql julia

2D Materials Database

A normalized database for Bob Hurt's lab to track and publish data on toxicity of 2D materials.
neuroscience creton-lab python

Automated Analysis of Zebrafish Behaviors

Automated Analysis of Zebrafish Behaviors is a set of tools and deep learning models to autonomously detect zebrafish behaviors from a image set or video stream.
neuro gcp pipelines serre-lab python

Automated Continuos Behavioral Monitoring (ACBM)

Automated Continuous Behavioral Monitoring (ACBM) is a machine vision-based automated phenotyping method to detect and quantify the earliest-detected phenotypes in Tdp43Q331K knock-in mice. This method entails continuous video recording for 5 days that is then scored by a trained computer system. The system is a set of DL models deployed on google cloud platform using Kubeflow pipelines. Our goal is to establish sensitive, robust, objective, and open-source machine vision-based behavioral analysis tools that will be widely available to workers in the field.
behavioral-tasks borton-lab openmind frank-lab nassar-lab javascript vuejs

Beehive

A hub for researchers to share and find behavioral tasks
cognitive-science nassar-lab frank-lab shenhav-lab oh-lab javascript vuejs

Cognitive Research Registration App

Web application that allows participants to register for studies, and for researchers to manage participant registrations
vr desktop riddc c++

Desktop VR Volume Viewer

A simple viewer for visualizing volumetric datasets. It supports color mapping through a transfer function that maps specific data values to a scalar color. The view camera is fully interactive, and it works on multiple systems (Windows and Linux). It also support multiple displays devices (desktop, VR HMDs, cave-systems).
vr desktop c++

DrawOnAir (cave-painting)

A collaboration between Dr Daniel Keefe (University of Minnesota), Dr David Laidlaw (Brown University) and CCV to expand 3D DrawOnAir haptic functionality to VR systems
ecology web riddc typescript vuejs nodejs

Narragansett Bay Data Explorer App

Explore historical and real-time data about water quality, temperature, and more from the Narragansett Bay.
vr web oceanography riddc javascript reactjs

Narragansett Bay Volume Viewer

The 3D volume viewer of the Narragansett Bay and Rhode Island Sound showing the Ocean State Oceanographic Model predictions for Salinity and Temperature.
neuro engineering openmind borton-lab c# python typescript

OpenMind Neuromodulation Interface (OMNI)

OMNI is a software framework for interfacing with neuromodulation systems in a platform, device, and programming language agnostic way.
public-health pphc javascript vuejs

Provident

A web app to support the PROVIDENT research study looking to prevent drug-related deaths in neighborhoods across Rhode Island. The dashboard showcases a predictive analytics model that identifies neighborhoods where future overdose deaths are most likely to occur. We are also tracking interventions from organizations and what effects they will have on the overdose data. The results from this study will improve public health decision-making and inform resource allocation to communities that should be prioritized for evidence-based prevention, treatment, recovery, and overdose rescue services.
computational-psychiatry mobile peac-lab typescript react-native

SOMA pain & recovery

A mobile app that combines symptom tracking with neuroscientific assessments and tailored interventions. SOMA is designed to directly support individuals on their journeys to overcome pain.
public-health model pphc python

TITAN Model

TITAN (Treatment of Infectious Transmissions through Agent-based Network) is an agent-based simulation model used to explore contact transmission in complex social networks.
vr web javascript reactjs

Web Volume Viewer

Volumetric data visualization on the web with compatibility on VR devices. It supports color mapping through a transfer function that maps specific data values to a scalar color. Developed using React-JS and A-Frame.
neuroimaging bnc python

XNAT Tools

Python library that facilitates the export and conversion of data stored in Brown's XNAT platform to the Brain Imaging Data Structure (BIDS)